Leonid PershinandClaude Opus 4.8
bc18db5df6
CI / build-test (push) Successful in 1m17s
The organism-agnostic core of the gene system, built on the formula engine. GeneDef is a def describing a gene's kind (numeric/discrete), allele generation range/spread, mutation, variant distribution and its effects on named traits as formulas. Genome is a managed, variable- composition map (geneId -> Allele pair): generated from a gene set, bred meiotically with per-gene mutation, expressed to a phenotype (numeric mean / discrete lower-allele dominance); open composition allows hybrids. Phenotype.Compute aggregates each gene's effect formulas into a trait map (variable `value` = the gene's expressed phenotype, other gene ids and an environment context resolve too), so systems read traits, never genes. Nothing here is species-specific. Def JSON now supports string-named enums (JsonStringEnumConverter) so a gene's kind reads as "Discrete". Covered by GeneticsTests (generation/expression/breeding/traits) and GeneDefLoadTests (GeneDef through the real DefDatabase). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>